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This article is about how to convert the ENSG number of TCGA into gene symbol. The editor thinks it is very practical, so share it with you as a reference and follow the editor to have a look.

The ENSG number of TCGA is converted to gene symbol

The gene number in the TCGA database uses the Esembl number, but some analysis software needs to input the gene number is gene symbol, which requires the Esemble ID to be converted into gene symbol.

Use clusterProfiler for conversion:

# load related packages > library (clusterProfiler) > library (org.Hs.eg.db) # ID conversion type provided by the org.Hs.eg.db package > keytypes (org.Hs.eg.db) [1] "ACCNUM"ALIAS"ENSEMBL"ENSEMBLPROT"ENSEMBLTRANS"ENTREZID"ENZYME"EVIDENCE"EVIDENCEALL" [10] "GENENAME" GO "" GOALL "" IPI "" MAP "" OMIM "" ONTOLOGY "" ONTOLOGYALL "" PATH "[19]" PFAM "" PMID "" PROSITE "" REFSEQ "" SYMBOL "" UCSCKG "" UNIGENE "" UNIPROT "# Test ID > Test_id gene_ids gene_ids ENSEMBL SYMBOL GENENAME1 ENSG00000000971 CFH complement factor H2 ENSG00000001084 GCLC glutamate-cysteine ligase catalytic subunit3 ENSG00000001460 STPG1 sperm tail PG-rich repeat containing 14 ENSG00000001461 NIPAL3 NIPA like domain containing 35 ENSG00000001626 CFTR cystic fibrosis transmembrane conductance regulator6 ENSG00000001630 CYP51A1 Cytochrome P450 family 51 subfamily A member 1 Thank you for reading! This is the end of the article on "how to convert the ENSG number of TCGA into gene symbol". I hope the above content can be of some help to you, so that you can learn more knowledge. if you think the article is good, you can share it out for more people to see!

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