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This article introduces the knowledge of "how to use samtools tool docker image". In the operation of actual cases, many people will encounter such a dilemma, so let the editor lead you to learn how to deal with these situations. I hope you can read it carefully and be able to achieve something!

How to use docker image of samtools tool:

1. Query image:

$docker search INDEX NAME DESCRIPTION STARS OFFICIAL AUTOMATEDdocker.io docker.io//biocontainer-base Biocontainers base Image 0docker.io docker.io//samtools samtools 1.10 from 0

two。 Download the image

Docker pull docker.io//samtools:latest

Run the mirror and index the t.fa file using samtools

-rw-rw-r-- 1 biosoft biosoft 70 Mar 16 17:30 t.fa/biosoft/docker/samtoolstotal 24 root root RW Mar 16 17:30 t.fa/biosoft/docker/samtoolstotal 24 root root 14 Mar 16 17:55 t.fa.fai

Or you can directly pass in the current work path:

Docker run-v `pwd`: `pwd`-w `pwd`-- rm d505ac3f6c30 samtools faidx t.fa #-w sets the working path in the container, "how to use the samtools tool docker image". Thank you for reading. If you want to know more about the industry, you can follow the website, the editor will output more high-quality practical articles for you!

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