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This article mainly introduces the GSDS website docker image local construction example analysis, the article is very detailed, has a certain reference value, interested friends must read it!

Local build of GSDS website docker image

Sometimes the GSDS website can not be opened, and the server may not be maintained. The original website: http://gsds.cbi.pku.edu.cn/index.php backup website: http://gsds.gao-lab.org/index.php

Here, in order to make it easy for you to use GSDS and draw the genetic structure map, the Assembly Lecture Hall provides a free image so that you can build a GSDS website on your computer, so that you will never be unable to open the website. The specific methods are as follows:

Build the website system environment:

Operating system: win10 Education Edition

Docker:docker Desktop version 1. Download the docker image customized for GSDS provided by the group lecture hall > docker search omicsclass # search image NAME DESCRIPTION STARS OFFICIAL AUTOMATEDomicsclass/gene-family gene-family analysis docker image 4omicsclass/rnaseq RNA-seq analysis docker image build by omics. 3omicsclass/reseq whole genome resequence analysis 1omicsclass/blast-plus blast+ v2.9.0 0omicsclass/biocontainer-base Biocontainers base Image centos7 0omicsclass/isoseq3 isoseq3 v3.3.0 build by omicsclass 0omicsclass/bwa BWA v0.7.17 build by omicsclass 0omicsclass/samtools samtools v1.10 build by omicsclass 0omicsclass/blastall legacy blastall v2.2.26 0omicsclass/sratoolkit SRAtoolkit v2.10.3 and aspera v3.9.9.177872 0omicsclass/ampliseq-q2 Amplicon sequencing qiime2 v2020.2 image 0omicsclass/bsaseq NGS Bulk Segregant Analysis image 0omicsclass/ampliseq-q1 Amplicon sequencing qiime1 v1.9.1 image 0omicsclass/gwas gwas analysis images 0 > docker pull omicsclass/gsds-v2 # download image 2. Download the GSDS website source code download: gsds_v2.zip, and then extract the file to a directory:

I decompressed it to: d:\ gsds_v2.

3. Start docker image: > # View background image REPOSITORY TAG IMAGE ID CREATED SIZEomicsclass/gsds-v2 latest d77e054c3744 8 hours ago 2.54GBmattrayner/lamp latest 05750cfa54d5 5 days ago 915MBomicsclass/bsaseq latest d5ed7a70bfc8 13 days ago 9.77GBomicsclass/reseq v1.1 da154448a90f 4 weeks ago 8.83GBomicsclass/gene-family v1.0 2d1d640726dd 3 months ago 4.53GB > # start the docker website server in the background Notice the directory mapping-v parameter, the extracted directory D:\ gsds_v24. Open the website and use the local GSDS website:

Local address of the website: 127.0.0.1. If the website is not open, you can wait a moment. It will take time for the backend service to start.

The above is all the content of the article "sample Analysis of Local Construction of docker Image on GSDS website". Thank you for reading! Hope to share the content to help you, more related knowledge, welcome to follow the industry information channel!

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