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This article mainly introduces what is the use of circBank database, which has certain reference value. Interested friends can refer to it. I hope you will gain a lot after reading this article. Let Xiaobian take you to understand it together.

circBank collates circular RNA data from circBase database, performs protein coding potential and miRNA interaction prediction analysis based on sequence information, and organizes all results into online database for easy retrieval and browsing. The website is as follows

http://www.circbank.cn/

CircBank has developed a systematic naming system for circRNA, which uses hsa_circ plus the name of the source gene to distinguish circular RNA corresponding to different source genes. For multiple circular RNAs with the same source gene, they are distinguished by numerical suffixes, as follows

Through the search box on the home page, you can search according to circBank Id,circBase id, source gene name,Refseq transcript name, etc. The search results are shown as follows

Click on miRNA to view the results of interaction analysis, using miRanda and targetscan two software to predict the interaction between circRNA and miRNA, as shown below

Click on the circular RNA id to see the details

1. basic information

2. The corresponding conserved circRNA in mice

3. protein coding potential

CPAT and IRESfinder are used to predict the results, and the results are shown below.

4. mutation information

provides information on relevant mutation sites in the COSMIC database

5. m6A modification information

The information in the database is free download, its analysis of circular RNA protein coding potential, miRNA interaction method is worth learning, in addition, the idea of linking circular RNA with SNP, RNA modification, also provides a new perspective for circular RNA research.

Thank you for reading this article carefully. I hope that the article "circBank database is useful" shared by Xiaobian will be helpful to everyone. At the same time, I hope you will support it more, pay attention to the industry information channel, and more relevant knowledge is waiting for you to learn!

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