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This article mainly introduces how to use fastp software to cut fastq files, the article is very detailed, has a certain reference value, interested friends must read it!

Use fastp software to cut fastq files

Fastp is a relatively new data quality control software, which can process sequencing data. Here is how to cut the fastq file.

The command is as follows:

Fastp-in1 data_yuanshi/Tres_2_1.clean.fq.gz-out1 Tres_2_1.clean.fq.gz-in2 data_yuanshi/Tres_2_2.clean.fq.gz-out2 Tres_2_2.clean.fq.gz-trim_front1 15-trim_front2 15-correction-thread 8

Parameters:

-- in1 read1 input file

-- output file after out1 read1 cut

-- in2 read2 input file

-- output file after out2 read2 cut

-- trim_front1 cut the head of read1

-- trim_front2 cut the head of read2

-- tail cutting of read1 by trim_tail1

-- tail cutting of read2 by trim_tail2

-- thread sets the number of threads

The above is all the contents of the article "how to use fastp software to cut fastq files". Thank you for reading! Hope to share the content to help you, more related knowledge, welcome to follow the industry information channel!

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