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This article mainly introduces how to use evolview to beautify the evolutionary tree related knowledge, the content is detailed and easy to understand, the operation is simple and fast, and has certain reference value. I believe everyone will gain something after reading this article on how to use evolview to beautify the evolutionary tree. Let's take a look at it together.

1. Evolview address and usage

Evolutionary tree beautification, requires the following browsers to open, does not support IE browser and 360 browser

2 Tree beautification 2.1 Tree branching Add color

Then enter the grouping information that needs to be added in the configuration file, as follows:

AT2G04880.1,AT2G30250.1 blue adAT4G01250.1,AT4G31550.1 red adAT4G39410.1,AT5G49520.1 yellow ad

The first column, from one gene to another, indicates the range; the second column, for setting colors, the last column ad indicates setting colors for all branches; note that tabs are used to separate columns;

2.2 Evolutionary tree set branches label color etc.

This is the configuration file for the settings as follows, similar to the branch color settings, but also supports individual gene setting colors (last line); click on the red arrow and paste the following: Official configuration instructions

AT4G31550.1,AT4G01250.1 red adAT2G30250.1,AT2G04880.1 blue adAT1G80840.1 yellow2.3 background color settings for tree setting branch label

You can click on the red box in the above picture to view the official detailed configuration description; the configuration file is as follows: Official description

AT4G01720.1,AT1G55600.1 red adAT2G40740.1,AT4G23810.1 green ad2.4 phylogenetic tree added asterisk tag

The parameters are set as follows. The first column is the ID of the gene, followed by the shape and color. See the official detailed configuration instructions in the red box of the picture above. Details are provided in the official documentation.

AT4G01250.1 triangle,red:redAT3G58710.1 triangle,red:redAT1G29280.1 triangle,red:redAT2G34830.1 triangle,red:redAT1G30650.1 triangle,red:redAT5G52830.1 triangle,red:redAT4G23550.1 triangle,red:redAT2G21900.1 triangle,red:redAT5G45050.1 triangle,red:redAT2G30590.1 triangle,red:redAT2G24570.1 triangle,red:redAT3G04670.1 triangle,red:redAT2G23320.1 triangle,red:redAT5G28650.1 triangle,red:redAT4G24240.1 triangle,red:redAT4G31550.1 triangle,red:redAT2G04880.1 star,blue:blueAT5G56270.1 star,blue:blueAT4G26440.1 star,blue:blueAT3G01080.1 star,blue:blueAT4G12020.1 star,blue:blueAT2G03340.1 star,blue:blueAT4G26640.1 star,blue:blueAT1G13960.1 star,blue:blueAT2G37260.1 star,blue:blueAT2G38470.1 star,blue: blueAT5G07100.1 star, blue: blueAT2G30250.1 star, blue: blue2.5 evolutionary tree grouping ring

Add a grouping ring and set the buttons as follows:

Settings file description, official details: DatasetGroupLabel.md:

! grouplabelcolor=black,fontsize=14,fontcolor=black,linewidth=2AT4G01250.1,AT4G31550.1 text=group1,fontcolor=red,linewidth=4AT4G39410.1,AT5G49520.1 text=group2,linecolor=darkgrey,fontcolor=purple,linestyle=dashedAT5G01900.1,AT1G66560.1 text=group3,color=darkgreen,textorientation=vertical,linewidth=4,fontsize=16

As follows, belt! The behavior of the sign is a global variable, that is, the default setting parameter; the other first column is separated by the sign to indicate the range, and after the space, the display mode of various group grouping rings: text is the group name, fontcolor is the font color, linewidth ring thickness, textorientation controls the alignment style of the group name.

The content of this article on "How to beautify the evolutionary tree with evolview" is introduced here. Thank you for reading it! I believe everyone has a certain understanding of "how to use evolview to beautify the evolutionary tree." If you want to learn more, please pay attention to the industry information channel.

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