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GFF is mainly used to annotate genomes in the following format:

J15 glean gene 25308430 25309140. +. ID=Gglean067903; status=novel;J15 glean mRNA 25308430 25309140 0.976879 +. ID=Gglean067903-TA; Parent=Gglean067903; status=novel;J15 glean CDS 25308430 25308501. + 0 Parent=Gglean067903-TA;J15 glean CDS 25308646 25309140. + 0 Parent=Gglean067903-TA;J15 glean gene 126763 129003. +. ID=Gglean075841; status=novel;J15 glean mRNA 126763 129003 1 +. ID=Gglean075841-TA; Parent=Gglean075841; status=novel;J15 glean CDS 126763 126973. + 0 Parent=Gglean075841-TA;J15 glean CDS 127285 127628. + 2 Parent=Gglean075841-TA;J15 glean CDS 127719 127854. + 0 Parent=Gglean075841-TA;J15 glean CDS 128049 128185. + 2 Parent=Gglean075841-TA

GTF is mainly used to annotate genes in the following format:

J01 glean CDS 6976 7317. + 0 transcript_id "Gglean025939-TA"; gene_id "Gglean025939"; J01 glean CDS 7912 8162. + 0 transcript_id "Gglean025939-TA"; gene_id "Gglean025939"; J01 glean CDS 8245 8413. + 1 transcript_id "Gglean025939-TA"; gene_id "Gglean025939"; J01 glean CDS 8479 8790. + 0 transcript_id "Gglean025939-TA"; gene_id "Gglean025939"; J01 glean CDS 9444 9708. 2 transcript_id "Gglean025954-TA"; gene_id "Gglean025954"; J01 glean CDS 9778 9935. -0 transcript_id "Gglean025954-TA"; gene_id "Gglean025954"; J01 glean CDS 10012 10216. 2 transcript_id "Gglean025954-TA"; gene_id "Gglean025954"; J01 glean CDS 10299 10754. 2 transcript_id "Gglean025954-TA"; gene_id "Gglean025954"; J01 glean CDS 10838 10926. -0 transcript_id "Gglean025954-TA"; gene_id "Gglean025954"; J01 glean CDS 11015 11082. -1 transcript_id "Gglean025954-TA"; gene_id "Gglean025954"

Conversion:

The tool gffread in Cufflinks can directly realize the conversion between GFF and GTF.

# gff2gtfgffread my.gff3-T-o my.gtf#gtf2gffgffread merged.gtf-o-> merged.gff3 above is the content of this article on "how to convert GFF to GTF format". I believe you all have some understanding. I hope the content shared by the editor will be helpful to you. If you want to know more about it, please follow the industry information channel.

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