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This article mainly introduces how to use the LeafcircBase database, the article is very detailed, has a certain reference value, interested friends must read it!

LeafcircBase contains circular RNA information of the following five plant model organisms.

Arabidopsis thaliana

Glycine max

Oryza sativa

Triticum aestivum

Zea mays

Use the following two softwares to predict annular RNA

Find_circ

CircRNA_finder

Through the Browse menu on the official website, you can browse the circular RNA data corresponding to different species.

Taking Arabidopsis thaliana as an example, the results are as follows

Click on the name of the source gene to jump to the corresponding database. Click the Download button in the upper right corner to download all the results, and click Datails to view the details of the ring RNA, as shown below

You can see the corresponding software. If homology exists in other species, information about the homologous circular RNA is also listed, as shown below

Through this database, we can view not only the information of circular RNA in plants, but also the homology among different species.

The results in this database can be downloaded, and in the downloaded excel file, you can also see the number of the sample corresponding to each ring RNA in the SRA database.

The above is all the contents of the article "how to use LeafcircBase Database". Thank you for reading! Hope to share the content to help you, more related knowledge, welcome to follow the industry information channel!

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