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This article mainly shows you "how to use CIRCpedia database", the content is easy to understand, clear, hope to help you solve your doubts, the following let the editor lead you to study and learn "how to use CIRCpedia database" this article.

CIRCpedia is a comprehensive circular RNA database. The transcriptome data of more than 180 samples from 6 species were analyzed by CIRCexplorer software, and 262782 circular RNA were identified.

Http://www.picb.ac.cn/rnomics/circpedia/

The amount of data of annular RNA for each species is summarized as follows

The ring diagram corresponding to the table data is shown as follows

It can be seen that most of the circular RNA are human and mouse, and the circular RNA of these two species provides the results of conservative analysis. Through the four functions of the official website, we can easily explore the circular RNA data of different species and analyze the expression information in different tissues and samples.

1. Search

It can be searched by species, cell line, gene name or genome location, and circular RNA ID in circpedia. The search box is shown below.

The search results are as follows

The circular RNA ID, source gene, corresponding linear transcript, expression quantity, position of initiation and termination of exon, cell line, conservatism and other information were given.

2. Browse

View the relevant data through the JBowse Genome browser as follows

3. Download

You can easily download the information in the database, as shown below

4. Tool

The expression of annular RNA in different tissues or cell lines can be shown in the form of heat map or scatter diagram, as shown below

The first step is to enter the circular RNA ID, the second step is to select the species, the third step is to select the cell line, and the fourth step is to select the chart type, and then click the Draw button, and the corresponding results will be displayed in the panel on the right.

Through the online tools of the database, we can easily explore the expression of circular RNA in different species and different cell lines.

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