Shulou(Shulou.com)06/01 Report--

This article mainly introduces the use of PlantCircNet database, the article is very detailed, has a certain reference value, interested friends must read it!

The PlantCircNet database provides information on the ceRNA regulatory network composed of plant-related circRNA-miRNA-gene at the following URL

Http://bis.zju.edu.cn/plantcircnet/index.php

The database contains the ceRNA information of the following 8 species

Arabidopsis thaliana

Brachypodium distachyon

Glycine max

Hordeum vulgare

Oryza sativa

Solanum lycopersicum

Triticum aestivum

Zea mays

The official website contains the following functions

1. Search

A variety of retrieval methods are provided. The basic retrieval function supports entering the name of the circular RNA source gene and the name of the miRNA to query the corresponding ceRNA network, as shown below

The search results are as follows. Nodes of different shapes represent different RNA. For specific correspondence, you can view the legend. Click on the node of RNA to view the details of the node.

2.Browse

By selecting a species, you can view the corresponding ring RNA information, and click Details to view the details, as shown below

3. Blast

Blast is used to compare the entered query sequence with the circular RNA sequence in the database, as shown below

4. Download

The gtf file and fasta sequence file corresponding to the ring RNA are provided, as well as a list of ceRNA for download, as shown below

This database is the first plant ceRNA regulatory network database, which can be used to study the ceRNA of plants.

The above is all the contents of the article "what is the use of PlantCircNet database". Thank you for reading! Hope to share the content to help you, more related knowledge, welcome to follow the industry information channel!

Welcome to subscribe "Shulou Technology Information " to get latest news, interesting things and hot topics in the IT industry, and controls the hottest and latest Internet news, technology news and IT industry trends.