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Editor to share with you how to install Augustus, I believe that most people do not know much about it, so share this article for your reference, I hope you can learn a lot after reading this article, let's go to know it!

. Augusust is a software for predicting the genetic structure of eukaryotes. The official website is as follows:

Http://bioinf.uni-greifswald.de/augustus/

Mainly introduces the installation process of the software, this software depends on a lot of other software, the installation process is more tedious. Here I demonstrate through a basic docker image of centos. Start the centos container first, with the following command

Docker run-I-t-rm centos1. Install the necessary library file yum install-y gcc gcc-c++ make automakeyum install-y boost boost-devel boost-docyum install-y zlib zlib-devel ncurses-devel bzip2-devel xz-develyum install-y git2. Install cmake

The version of cmake must be greater than 3.6. the installation process is as follows

Curl-o cmake-3.12.0.tar.gz https://cmake.org/files/v3.12/cmake-3.12.0.tar.gztar xzvf cmake-3.12.0.tar.gzcd cmake-3.12.0./bootstrapmakemake install3. Install bamtools

You must download the latest version from github. The installation process is as follows

Git clone https://github.com/pezmaster31/bamtoolscd bamtools/mkdir build & & cd buildcmake.. / makemake install4. Install hitslibgit clone https://github.com/samtools/htslibcd htslib/autoheaderautoconf./configuremakemake install5. Install samtoolsgit clone https://github.com/samtools/samtoolscd samtools/autoheaderautoconf./configuremakemake install6. Install bcftoolsgit clone https://github.com/samtools/bcftoolscd bcftoolsautoheaderautoconf./configuremakemake install7. Install tabixgit clone https://github.com/samtools/tabixcd tabix/make8. Install augustus

First, set the installation directory of htslib, samtools, bcftools and tabix, and require these software to be installed in the same directory. The structure is as follows

Tools/ ├── bcftools ├── htslib ├── samtools └── tabix

Set the environment variable TOOLDIR, with the following command

Export TOOLDIR= "/ tools"

Once set up, the command to install augustus is as follows

Wget http://bioinf.uni-greifswald.de/augustus/binaries/augustus-3.3.1.tar.gztar xzvf augustus-3.3.1.tar.gzcd augustus-3.3.1/makemake install

At this point, the installation is considered successful.

The above is all the contents of the article "how to install Augustus". Thank you for reading! I believe we all have a certain understanding, hope to share the content to help you, if you want to learn more knowledge, welcome to follow the industry information channel!

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