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This article mainly introduces the relevant knowledge of "how to use geo_gene_exp_download.r GEO of R language". The editor shows you the operation process through an actual case. The operation method is simple, fast and practical. I hope this article "how to use geo_gene_exp_download.r GEO of R language" can help you solve the problem.

Geo_download.r GEO data download

Usage: $Rscript / share/work/huangls/piplines//tcga_geo/scripts/geo_gene_exp_download.r-husage: / share/work/huangls/piplines//tcga_geo/scripts/geo_gene_exp_download.r [- h]-g gse [- f func] [- p palette] [- G gpl] [- s Gene Symbol] [- x] [- log2] [- o outdir] [- H height] [- W width] download GEO data Https://www..com/article/1492optional arguments:-h,-- help show this help message and exit-g gse,-- gse gse GEO Series Accession [required]-f func,-- func func dup gene name expression select func: mean max median [default max]-p palette,-- palette palette A palette name from RColorbrewer [default Accent]-G gpl -- gpl gpl GPL file for annotation [default None]-s Gene Symbol,-- symbol Gene Symbol Gene Symbol column name [default Gene Symbol]-x,-- no.xaxis not show xaxis sample name [default False]-- log2 whether do log2 normalize [optional, default: False]-o outdir -- outdir outdir output file directory [default / share/nas1/huangls/pro ject/zx-20210914-383-gwas_cfdr/gene_exp]-H height,-- height height the height of pic inches [default 8]-W width -- width width the width of pic inches [default 10] example: Rscript / share/work/huangls/piplines//tcga_geo/scripts/geo_gene_exp_download.r-g GSE7429Rscript / share/work/huangls/piplines//tcga_geo/scripts/geo_gene_exp_download.r-g GSE43488-G GPL13667-15572.txt on "how to use geo_gene_exp_download.r GEO in R language" ends here Thank you for your reading. If you want to know more about the industry, you can follow the industry information channel. The editor will update different knowledge points for you every day.

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