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This article introduces the relevant knowledge of "the steps of JBrowse installation and configuration". Many people will encounter such a dilemma in the operation of actual cases, so let the editor lead you to learn how to deal with these situations. I hope you can read it carefully and be able to achieve something!

I use Ali cloud server Ubuntu system.

Follow the JBrowse instructions: how to install JBrowse in the steps in this tutorial, the commands used to install are

Sudo mkdir / var/www/jbrowse

Sudo chown `whoami` / var/www/jbrowse

Cd / var/www/jbrowse

# unzip it and cd into it

Unzip JBrowse-1.16.9.zip

Cd JBrowse-1.16.9

# run setup.sh, quick start with example data

. / setup.sh

It should be noted here that the command sudo chown `whoami` / var/www/jbrowse is not in single quotation marks, but the one below the ESC key.

. / setup.sh this step will run for a long time, because you need to install a lot of dependent perl modules, here complain about the trouble of installing perl modules, or I don't know the correct installation method myself!

My nginx has been installed. Type http://123.56.89.209/jbrowse/JBrowse-1.16.9/index.html?data=sample_data/json/volvox in my computer browser.

Error

We don't know why yet.

Then I deleted the index.nginx-debian.html file in the / var/www/html/ directory (remember to back up), and then copied everything in the / var/www//jbrowse/JBrowse-1.16.9/ directory to the / var/www/html/ directory

Cp-R.. / jbrowse/JBrowse-1.16.9/*. /

Then type http://123.56.89.209/index.html?data=sample_data/json/volvox in your local computer browser

Finally saw the result.

Image.png

This is the end of the "steps for JBrowse installation and configuration". Thank you for reading. If you want to know more about the industry, you can follow the website, the editor will output more high-quality practical articles for you!

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