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This article mainly introduces the relevant knowledge of AWK how to extract all gene location information, the content is detailed and easy to understand, the operation is simple and fast, and has a certain reference value. I believe you will gain something after reading this AWK article on how to extract all gene location information. Let's take a look.

Extract all gene location information from genome annotation information GFF file

The annotation information of all genes in the genome is stored in the gff file. If you want to get the location information of all genes in the genome, you can use the awk command to extract in batches, as follows:

$grep-v'# 'Arabidopsis_thaliana.TAIR10.41.gff3 | awk-F "[\ tasking: ] "'BEGIN {OFS="\ t "} $3 million =" gene "{print $1 $10}'| head1 3631 5899 AT1G010101 6788 9130 AT1G010201 11649 13714 AT1G010301 23121 31227 AT1G010401 31170 33171 AT1G010501 33365 37871 AT1G010601 3844441017 AT1G010701 4497047059 AT1G010801 47234 49304 AT1G010901 4990951210 AT1G01100 on "how AWK extracts all Gene location Information" ends here Thank you for reading! I believe that everyone has a certain understanding of the knowledge of "how to extract all gene location information from AWK". If you want to learn more, you are welcome to follow the industry information channel.

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